PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.175730.1
Common NameCsa_3G733950, LOC101203710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 579aa    MW: 64926.2 Da    PI: 4.9405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.175730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000124835221255
                     H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R R+ i +++ eLr+++P+      +K s    Lek+++++ +Lq
  Cucsa.175730.1 483 RdRQLIQDRIKELRQIVPNG-----GKCSIDGLLEKTIKHMLYLQ 522
                     447889************98.....899999*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-176124IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00152469523No hitNo description
Gene3DG3DSA:4.10.280.105.5E-5470535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-6471537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.718472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
METLSLNHLL KSLCTHSQWI YAVFWKINYQ TPPILAWEDG YCNYSKLEKH VGNIEYRMIR  60
EADQHATSYY GTNTYDGDSG SCSVEPAVAD MFCLQYALGE GTVGSAASSG NHSWVFLEDI  120
FARNLSSASI YEVTENLSVV AYIKDRFNDI NFVDGDACAS VVPRPFESLD EQTNFTTYML  180
EAENHGAIHD IKPPVSTFNQ CVTIQDVLTV SRRIRPETLH CEKGHKSDIH RTNMEELFAP  240
LYQSVSTGEV EFSDFISLES LLPLGSQLRN HETGLFESNP HIFHSYSLDN VVGQQSGHNL  300
ATKKEYGIAD NFFSFPDDCE LQKALGPVLL AQKHTNEFSY DPSSTVKDNT SSMLCSRDLK  360
EGDIEHLLEA MISAEDISDD TFSNNTINAR IADLVAKPCL STNTYQSESS TIVVNDPALW  420
NIPESTTTAT GRKNLTSLST SNSLVVNERE ERDRDMAQHR KGMKRSNSSR QIKVTSNTRQ  480
RPRDRQLIQD RIKELRQIVP NGGKCSIDGL LEKTIKHMLY LQRVTDRAEK LKQLAQQEDF  540
DSENCTDLEN EGVQPNGTSW TWAGSGIPGT HAYKDAMQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137928.20.0PREDICTED: transcription factor EMB1444-like
TrEMBLA0A0A0LFI20.0A0A0A0LFI2_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1071233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-22conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]